What Is a Molecule?

Stated Clearly
26 Jun 201908:18

Summary

TLDRIn 'What is a Molecule?' by Stated Clearly, the video script explores the concept of molecules as groups of atoms bonded together through chemical bonds. It illustrates how atoms like hydrogen can form covalent bonds, and how different atoms can bond in varying numbers, creating molecules ranging from simple diatomic gases to complex proteins with half a million atoms. The script also delves into molecular vibrations, their applications in technology, and recent advances in imaging these vibrations at the atomic scale, showcasing the ongoing marvels and discoveries in the field of chemistry.

Takeaways

  • 🧲 A molecule is a group of atoms held together by chemical bonds, often covalent bonds where atoms share electrons.
  • 🌌 Hydrogen atoms can form a molecule by sharing electrons, but this bond can be broken by heat or interactions with other molecules.
  • 🔗 Different atoms can form varying numbers of bonds, with hydrogen limited to one, oxygen to two, and carbon to four covalent bonds.
  • 💥 Atoms like argon typically do not form bonds due to their stable electron configuration.
  • 🌐 Large molecules can be formed through proper arrangement of bonds, such as in water molecules which consist of three atoms.
  • 🍬 Glucose, a sugar, is an example of a molecule made of 24 atoms, arranged in a specific pattern of carbon, hydrogen, and oxygen.
  • 🧬 Proteins can be extremely large, with some containing over half a million atoms covalently bound together.
  • 🔬 Space-filling models are used to represent molecules, showing the electron cloud of atoms and their relative sizes.
  • 📐 Ball and stick models highlight the bonds between atoms, providing a clearer view of the molecular structure.
  • 🖼️ In 2009, Dr. Leo Gross and his team at IBM took actual skeletal images of molecules, showcasing the accuracy of atomic theory.
  • ⏱ Molecules vibrate between their bonds, behaving like springs, with the vibrations influenced by the repulsion of protons and the attraction of shared electrons.
  • 🕰 Molecular vibrations have practical applications, such as in quartz watches that use the consistent speed of atomic vibrations to keep time.

Q & A

  • What is the basic definition of a molecule?

    -A molecule can be defined as a group of atoms stuck together, typically through chemical bonds.

  • How does a hydrogen atom form a bond with another hydrogen atom?

    -Two hydrogen atoms can form a bond when they come close enough for their electrons to be attracted to each other's protons, leading to a collision and the formation of a covalent chemical bond, creating a hydrogen molecule.

  • What is a covalent bond and how is it formed?

    -A covalent bond is a chemical bond formed when two atoms share a pair of electrons, as seen in the formation of a hydrogen molecule where the two atoms share each other's electrons.

  • Why can't a hydrogen atom form more than one covalent bond at a time?

    -A hydrogen atom can only form one covalent bond at a time because it has only one electron available for bonding.

  • How does the number of bonds an atom can form relate to its atomic properties?

    -The number of bonds an atom can form is related to its atomic properties, such as the number of valence electrons it has, which determine its bonding capacity.

  • What is the composition of a standard water molecule?

    -A standard water molecule is composed of three atoms: two hydrogen atoms and one oxygen atom, with the oxygen forming one bond with each hydrogen atom.

  • How many atoms are in a single molecule of glucose?

    -A single molecule of glucose is made of 24 atoms, arranged in a specific pattern of carbons, hydrogens, and oxygens.

  • What is a space-filling model in the context of molecular structures?

    -A space-filling model is a type of molecular model that shows the approximate shape of the electron cloud around each atom, with different types of atoms represented by different colors.

  • How do ball and stick models differ from space-filling models?

    -Ball and stick models highlight the bonds between atoms, showing the skeleton of a molecule rather than the outer surface of each atom's electron cloud, making it easier to understand which atoms are bound together.

  • What was the significance of Dr. Leo Gross and his team's discovery in 2009?

    -Dr. Leo Gross and his team at IBM discovered a way to take actual skeletal pictures of molecules, providing a significant advancement in molecular imaging and offering a visual confirmation of atomic theory.

  • What is the importance of understanding molecular vibrations?

    -Understanding molecular vibrations is crucial as it has potential applications in various fields such as chemistry, medicine, electronics, and computer engineering, including the development of more accurate timekeeping devices.

  • How do molecular vibrations relate to the functioning of a quartz watch?

    -In a quartz watch, the vibrations of the quartz crystal's atoms are used to keep time. The crystal oscillates at a precise frequency, which is counted by the watch's electronics to move the second hand accurately.

  • What was the significance of the images published by Joonhee Lee and his colleagues in the journal Nature in 2019?

    -The images published by Joonhee Lee and his colleagues were the first-ever images of molecular vibrations at the atomic scale, providing researchers with detailed insights into how molecules move and behave.

  • How can advances in molecular imaging impact the development of technology and scientific understanding?

    -Advances in molecular imaging allow for the observation of molecular behavior at an atomic level, which can lead to the development of more efficient solar panels, computer chips that do not overheat, and a deeper understanding of DNA.

Outlines

00:00

🌌 The Formation and Structure of Molecules

This paragraph introduces the concept of molecules as groups of atoms joined by chemical bonds, typically covalent. It explains how atoms like hydrogen can share electrons to form molecules, and how the number of bonds an atom can form varies by element, using hydrogen, oxygen, carbon, and argon as examples. The paragraph also touches on the complexity of molecules, ranging from simple diatomic hydrogen molecules to large proteins with hundreds of thousands of atoms. It describes different molecular models, including space-filling and ball-and-stick models, and highlights a significant advancement in molecular imaging by Dr. Leo Gross's team at IBM, which allowed for the first actual skeletal images of molecules. The summary concludes with an explanation of molecular vibrations, which are likened to springs representing the balance of repulsive and attractive forces within the molecule, and their importance in various scientific fields.

05:02

📡 Molecular Vibrations and Scientific Advancements

The second paragraph delves into the practical applications of understanding molecular vibrations, such as in the precision of quartz watches that use the consistent resonance of a crystal's atoms to keep time. It mentions a groundbreaking study published in Nature by Joonhee Lee and colleagues, which captured the first images of molecular vibrations at the atomic scale. These images are vital for creating accurate models to predict molecular behavior under different conditions. The potential applications of this technology are vast, including the development of more efficient solar panels and computer chips, as well as a deeper understanding of DNA. The paragraph concludes with a nod to the ongoing support from the National Science Foundation, the CaSTL Research Center, and Patreon supporters, and promotes an educational online game called Bond Breaker, designed to teach chemistry and nuclear physics in an engaging way.

Mindmap

Keywords

💡Molecule

A molecule is a group of atoms bonded together through chemical bonds. It is central to the video's theme as it explains the basic unit of matter that makes up everything in the universe. The script uses the example of a hydrogen molecule, which is formed when two hydrogen atoms share a covalent bond.

💡Chemical Bond

A chemical bond is a force that holds atoms together in a molecule. The video emphasizes the importance of chemical bonds in forming molecules, such as the covalent bond between two hydrogen atoms. The script also discusses how different types of atoms can form different numbers of chemical bonds.

💡Covalent Bond

A covalent bond is a type of chemical bond where atoms share electrons. The script illustrates this with the formation of a hydrogen molecule, where two hydrogen atoms share their electrons to form a bond, highlighting the concept's relevance to the video's theme of molecular formation.

💡Atom

An atom is the smallest unit of a chemical element, consisting of protons, neutrons, and electrons. The video script describes the structure of a hydrogen atom and its role in forming molecules, such as when two hydrogen atoms collide and form a covalent bond.

💡Electron

Electrons are negatively charged subatomic particles that orbit the nucleus of an atom. In the video, electrons play a crucial role in attracting protons and facilitating the formation of chemical bonds, as seen in the creation of a hydrogen molecule.

💡Proton

Protons are positively charged subatomic particles found in the nucleus of an atom. The script mentions protons in the context of a hydrogen atom's nucleus and their attraction to electrons, which is essential for forming chemical bonds.

💡Vibration

Vibration in the context of molecules refers to the oscillation or movement of atoms within a molecule. The video explains that molecules vibrate between their bonds due to the forces between the nucleus and the shared electrons, and how this can be influenced by adding energy.

💡Space-Filling Model

A space-filling model is a type of molecular model that represents the volume occupied by the electron cloud of atoms. The script describes these models as a way to visualize the outer surface of atoms and how they look similar to actual molecules under a scanning tunneling microscope.

💡Ball and Stick Model

A ball and stick model is a molecular model that emphasizes the bonds between atoms rather than their outer surfaces. The video script mentions this model as a way chemists use to understand which atoms are bound together, providing clarity in complex molecular structures.

💡Scanning Tunneling Microscope

A scanning tunneling microscope is an instrument used to visualize surfaces at the atomic level. The script refers to it when discussing how real molecules look under such a microscope, noting the fuzzy edges that reflect the soft boundaries of atoms.

💡Atomic Theory

Atomic theory is a fundamental principle in chemistry that explains the nature of matter and its interactions at the atomic level. The video script highlights the predictive power of atomic theory, which allowed scientists to draw molecules accurately even before high-resolution imaging was possible.

💡Molecular Vibration

Molecular vibration refers to the regular movement of atoms within a molecule due to the interplay of forces between the atoms' nuclei and the shared electrons. The video script discusses the significance of these vibrations in various applications, such as in the precision of quartz watches.

Highlights

A molecule is a group of atoms stuck together, usually through chemical bonds.

Hydrogen atoms can form a single hydrogen molecule by sharing electrons in a covalent bond.

Different types of atoms can form different numbers of chemical bonds.

An oxygen atom typically forms two bonds, while a carbon atom can make four.

Argon atoms usually do not bond with anything due to their full outer electron shell.

Huge molecules can form through proper arrangement of bonds, such as in water molecules made of three atoms.

Glucose, a sugar, is a molecule made of 24 atoms in a special arrangement of carbons, hydrogens, and oxygens.

A typical fatty acid in the human body can be made of 38 atoms.

Proteins can contain over half a million atoms covalently bound together.

Space-filling models show the outside of each atom's electron cloud and are used to visualize molecules.

Ball and stick models are used by chemists to highlight the bonds between atoms in a molecule.

Dr. Leo Gross and his team at IBM discovered a way to take actual skeletal pictures of molecules.

Molecular vibrations are the result of a perpetual tug-of-war between protons and shared electrons.

Adding energy to a molecule increases the amplitude of its vibrations without changing the frequency.

Molecular vibrations have applications in chemistry, medicine, electronics, and computer engineering.

Quartz watches use the unchanging speed of molecular vibrations to keep nearly perfect time.

Joonhee Lee and colleagues published the first images of molecular vibrations at the atomic scale.

Recent advances in molecular imaging allow for snapshots of molecular vibrations, aiding in understanding molecular behavior.

Molecular imaging technology is being used to improve solar panels, computer chips, and understand DNA.

The animation is part of an intro to chemistry series sponsored by the National Science Foundation and the CaSTL Research Center.

An online video game called Bond Breaker was created to teach chemistry and nuclear physics concepts.

Transcripts

play00:01

Stated Clearly presents

play00:05

What is a molecule

play00:09

Though textbook definitions of the word molecule can sometimes be a bit complicated

play00:13

A molecule can be loosely thought of as a group of atoms stuck together

play00:19

Usually through chemical bonds

play00:21

Here we see a single hydrogen atom traveling through the cosmos

play00:25

It's made of one positively charged proton in its nucleus

play00:29

and one negatively charged electron

play00:32

If our lone hydrogen atom happens to pass close enough to another lone hydrogen atom

play00:36

their electrons, which are attracted like magnets to protons

play00:40

can pull the atoms toward each other until they collide and stick together

play00:44

The two atoms now share each other's electrons in what is called a covalent chemical bond

play00:50

What were once two individual hydrogen atoms have now formed a single hydrogen molecule

play00:57

This bond is not permanent

play00:59

with enough heat or due to interactions with other molecules

play01:03

the hydrogen atoms will readily separate once more

play01:06

Different types of atoms can form different numbers of chemical bonds

play01:11

A hydrogen atom can only form one covalent bond at a time

play01:14

If a third hydrogen atom were to collide with a hydrogen molecule

play01:18

It would simply bounce off or if it hits hard enough, or in just the right place

play01:23

it can trade spots with one of the existing atoms

play01:27

An oxygen atom can typically form two bonds

play01:31

A carbon atom can make four

play01:34

An argon atom won't usually bond with anything

play01:39

Even though possible bond numbers per atom are pretty small

play01:43

huge molecules can form if bonds happen to be properly arranged

play01:47

For example, even though hydrogen can only form one bond

play01:51

a standard water molecule is always made of three atoms

play01:54

This is possible because oxygen which can form two bonds

play01:58

forms just one bond with each hydrogen atom

play02:02

A single molecule of the sugar known as glucose

play02:05

is made of 24 atoms, a special arrangement of carbons, hydrogens and oxygens

play02:11

A typical fatty acid in the human body may vary in length

play02:15

this one here is made of 38 atoms

play02:19

And finally a single protein, depending on the type

play02:22

can contain over half-a-million atoms all covalently bound together

play02:28

The molecular models that I've been showing you here so far are what we call space-filling models

play02:33

They show us roughly what the outside of each atoms electron cloud looks like

play02:37

and different types of atoms have been assigned different colors

play02:40

when we look at real molecules with a scanning tunneling microscope

play02:44

they look pretty similar to these space-filling models,

play02:46

but the atoms are not color coded and their edges are fuzzy

play02:50

That blur is partly due to the microscopes limitations

play02:54

and partly because atoms actually do have soft boundaries

play02:57

When looking at complex molecules

play02:59

space-filling models and especially actual images of real molecules

play03:03

can be a bit confusing to look at, which atoms are bound together

play03:07

which atoms are just close to one another

play03:09

for this reason, chemists sometimes use what are called ball and stick models

play03:14

these highlight the bonds between atoms

play03:16

the skeleton of a molecule instead of showing each atoms outside surface

play03:21

In 2009, Dr. Leo Gross and his team at IBM,

play03:26

discovered a way to take actual skeletal pictures of molecules.

play03:31

This is not a drawing

play03:32

This is not a computer-generated model.

play03:35

This is an actual scan of a real molecule

play03:39

Amazingly atomic theory was allowing scientists to draw molecules with surprising accuracy

play03:44

over 100 years before this image was finally taken

play03:47

That's quite a testament to what good scientific theory can do

play03:52

When atoms come together to form a molecule

play03:54

the molecule vibrates between its bonds in a regular pattern

play03:58

You can think of the bond as a bouncing spring

play04:01

This is because the protons and the nucleus of each atom repel one another

play04:04

while the shared electrons in each bond pull the atoms back together

play04:08

The vibrations we find in molecules are the result of a perpetual tug-of-war between these two forces

play04:14

if you add more energy to a molecule with heat or light

play04:18

The amplitude, the length of each vibration will increase

play04:22

without changing how frequently each vibration completes its cycle

play04:26

This means the bouncing spring stretches further and the atoms move faster

play04:32

If you add enough energy the bond will eventually break

play04:36

Scientists are fascinated by molecular movements and want to understand them better

play04:41

These vibrations have a huge number of potential applications in chemistry, medicine,

play04:45

electronics and computer engineering

play04:48

Watchmakers for example use the unchanging speed of molecular vibrations

play04:52

to build watches that keep nearly perfect time

play04:56

In a quartz crystal, bond vibrations between its atoms resonate causing the entire crystal

play05:01

when cut to the right size and shape to oscillate microscopically at 32,768 times/second

play05:10

Inside each quartz watch is a tiny crystal along with electronics that can count the crystals vibrations

play05:16

This then tells the second hand precisely when to move

play05:21

In April 2019 in the journal Nature,

play05:24

Joonhee Lee and his colleagues from The Center For Chemistry at the Space-Time Limit

play05:28

have published the first images ever taken

play05:31

of molecular vibrations at the atomic scale

play05:34

Though these images may seem a bit strange to you and I,

play05:37

they show researchers exactly how this molecule bends and pulses between its bonds

play05:43

Scientists can use images like this to build accurate models

play05:46

predicting exactly how different molecules will behave under various conditions

play05:52

With this new precision knowledge, engineers are working on solar panels that generate far more energy,

play05:58

computer chips that do not overheat

play06:00

and researchers are planning to use this imaging technology to better understand our own DNA

play06:07

Even in the field is thoroughly studied this chemistry. The old saying is still true

play06:12

Somewhere, something incredible is waiting to be known

play06:17

So in summary, what is a molecule?

play06:20

A molecule can be described as a group of atoms stuck together through chemical bonds

play06:26

different types of atoms can form different numbers of bonds

play06:30

Molecules can be as small as two atoms stuck together

play06:32

or as is the case for some proteins

play06:35

They may contain over half a million atoms, all covalently bound together

play06:40

Recent advances in molecular imaging are now letting us take snapshots

play06:44

of molecular vibrations at the atomic scale

play06:47

I'm John Perry and that as a molecule Stated Clearly

play06:55

This animation is part of an intro to chemistry series

play06:58

sponsored in part by the National Science Foundation and the CaSTL Research Center

play07:02

That's Chemistry at the Space-Time Limit.

play07:05

It was also funded in part by my wonderful supporters on patreon.com/statedclearly

play07:11

Thank you. I could not do this without you

play07:15

Along with this video series, CaSTL and The National Science Foundation

play07:19

have funded the creation of an amazing online video game called Bond Breaker

play07:23

In the game, you are a proton

play07:24

and you go on a bunch of little adventures learning powerful concepts

play07:27

in chemistry and nuclear physics as you go

play07:30

I've shown you clips of the game before but a new version was just released and it is wonderful

play07:35

Go check it out at TestTubeGames.com

play07:38

There is a link down in the video description

play07:41

Not only will it teach you new things about chemistry and atomic physics

play07:45

It's also almost too fun to play

play07:48

Today I went to play it for just a few minutes so I could record my screen

play07:52

and show you what the game looks like

play07:53

But I ended up playing for over an hour.

play07:56

So kudos to Andy at Test Tube Games, you have done an amazing job

play08:00

Teachers use this in your classrooms, it's free

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関連タグ
Molecular ScienceChemical BondsAtomic TheoryCovalent BondsElectron SharingMolecular VibrationQuartz WatchesMolecular ImagingEducational AnimationChemistry Series
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